At the start of "Low Blow" Cortez says "Go get that Aleph from elite soldiers", but they no longer give Aleph after update.
When we reached first pressure segment, Cortez told us about it, but then an engineer dropped pressure below it, although it not supposed to work like that. Maybe segment was close to full, and Cortez said it's full too early.
Also we had host migration, which reset our pressure from almost full to 0, but we kept our number of lives. If number of lives is stored somewhere else, then you could keep more level progress elsewhere, like segments of progress or how many healthbars the boss has lost. It really feels bad when you've reached half the mission, and then you get reset to the start without lives.